Workshop Day 1 Monday, June 10, 2024. All Times EST |
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| Start Time | End Time | Duration | |
| 11:00 AM | 2:00 PM | 3h | 1A - Workshop Causal Inference in R Lucy D'Agostino McGowan, Malcom Barrett Assistant Professor, Research Software Engineer, Wake Forest University, Stanford University |
| 11:00 AM | 2:00 PM | 3h | 1B - Workshop Promover la Equidad Científica: Una Introducción al uso de R para la programación en Bioestadística y Ciencia de Datos, en Español Catalina Canizares-Escobar, Francisco Cardozo Study Coordinator, PhD student, Florida International University |
| 2:00 PM | 2:30 PM | 30m | Break |
| 2:30 PM | 5:30 PM | 3h | 2A - Workshop Google BigQuery: First Steps in R Joy Payton Data Scientist, CHOP |
| 2:30 PM | 5:30 PM | 3h | 2B - Workshop Project Oriented Workflows Shannon Pileggi Data Scientist, Prostate Cancer Clinical Trials Consortium |
| 5:30 PM | 8:30 PM | 3h | 3A - Workshop Tidy time series analysis and forecasting Mitchell O'Hara-Wild Data Scientist, Nectric |
R/Medicine Schedule
Workshop Day 2 Tuesday, June 11, 2024. |
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|---|---|---|---|
| Start Time | End Time | Duration | |
| 11:00 AM | 2:00 PM | 3h | 4A - Workshop Next Generation Shiny Apps with {bslib} Garrick Aden-Buie Software Engineer, Posit |
| 11:00 AM | 2:00 PM | 3h | 4B - Workshop From R to PowerPoint: Advanced PowerPoint Presentations Using {officer} Theo Roe, Colin Gillespie R educators, Jumping Rivers |
| 2:00 PM | 2:30 PM | 30m | Break |
| 2:30 PM | 5:30 PM | 3h | 5A - Workshop Setting Up a Dockerized R Development Environment with VScode Rami Krispin Senior Manager/Data Scientist, Apple |
| 2:30 PM | 5:30 PM | 3h | 5B - Workshop Tidying your REDCap Data with {REDCapTidieR} Stephan Kadauke, Will Beasley Assistant Professor, Associate Professor, CHOP, Oklahoma University Health Sciences Center |
Demo Day Wednesday, June 12, 2024. |
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|---|---|---|---|
| Start Time | End Time | Duration | |
| 10:00 AM | 10:55 AM | 55m | 1 - Demo R Consortium's R-based Test Submission Package for FDA Evaluation: A Milestone in R-based Regulatory Submissions Joel Laxamana , Genentech, A Member of the Roche Group |
| 11:00 AM | 11:55 AM | 55m | 2 - Demo R + Snowflake to enable Medical Research Ryan MacLean , Snowflake |
| 12:00 PM | 12:30 PM | 30m | Break |
| 12:30 PM | 1:25 PM | 55m | 3 - Demo Handling Health Data Imbalance in Machine Learning Using R Olawale Awe , University of Colorado |
| 1:30 PM | 2:25 PM | 55m | 4 - Demo An Introduction to Tidy R Spatial Packages: Incorporating Historic Sociodemographic Data from the US Census and Visualizing Geographic Distributions Stephen Uong , Columbia University Mailman School of Public Health |
| 2:30 PM | 3:25 PM | 55m | 5 - Demo RosyREDCap – a REDCap-project-agnostic R package that uses an API token to make a single, updating, standardized R list object containing all metadata and data for exports, imports, transformation, and shiny applications Brandon Rose , University of Miami |
| 3:30 PM | 4:25 PM | 55m | 6 - Demo Word embeddings in mental health, from exploration to confirmation, towards multidimensional diagnoses Thomas Charlon , Harvard Medical School |
| 4:30 PM | 6:35 PM | 2h 5m | 7 - Demo No ChatGPT? No Problem!: Using the R Ecosystem to Facilitate the Extraction and Use of Knowledge from Scientific Literature Paul Kowalczyk , Adaptimmune |
Meeting Day 1 Thursday, June 13, 2024. |
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|---|---|---|---|
| Start Time | End Time | Duration | |
| 11:00 AM | 11:10 AM | 10m | 1 - Intro Welcome to R/Medicine 2024 Peter Higgins Professor, University of Michigan |
| 11:13 AM | 12:15 PM | 1h 2m | 2 - Keynote Statistical Challenges in Single-Cell and Spatial Transcriptomics Stephanie Hicks Associate Professor, Johns Hopkins |
| 12:15 PM | 12:35 PM | 20m | 4 - Regular talk flowchart: an R package for creating participant flow diagrams integrated with tidyverse Pau Satorra , Germans Trias i Pujol Research Institute and Hospital (IGTP) |
| 12:37 PM | 12:47 PM | 10m | 5 - Lightning talk Survival analysis with tidymodels Emily Zabor , Cleveland Clinic |
| 12:49 PM | 1:09 PM | 20m | 6 - Regular talk Reporting survival analysis results with the gtsummary and ggsurvfit packages Hannah Frick , Posit, PBC |
| 1:11 PM | 1:31 PM | 20m | 7 - Regular talk Cox Regression and other ways to survive survival analyses Mitchell Maltenfort , Children's Hospital of Philadelphia |
| 1:33 PM | 1:53 PM | 20m | 8 - Regular talk Identifying latent subgroups using regularized mixture cure models to develop risk stratification systems in cancer: Illustration using the hdcuremodels R package Kellie Archer , Ohio State University |
| 1:53 PM | 2:08 PM | 15m | Break |
| 2:08 PM | 2:18 PM | 10m | 9 - Lightning talk Leveraging the Power of Teal-Based R-Shiny Applications: Case Study from a TechBio Company Kasra Yousefi , Recursion Pharmaceuticals |
| 2:20 PM | 2:30 PM | 10m | 10 - Lightning talk A one year recap on teaching statistics to medical students: how can R and Quarto help? Chi Zhang , University of Oslo |
| 2:32 PM | 2:52 PM | 20m | 11 - Regular talk Creating Data Packages with Overproof {rUM} Raymond Balise , University of Miami |
| 2:54 PM | 3:14 PM | 20m | 12 - Regular talk SciDataReportR: Streamlining Scientific and Clinical Data Exploration in R Raha Dastgheyb , Johns Hopkins School of Medicine |
| 3:16 PM | 3:36 PM | 20m | 13 - Regular talk Updating Quarto Slides Automatically with GitHub Actions Rose Hartman , Children's Hospital of Philadelphia |
| 3:36 PM | 3:51 PM | 15m | Break |
| 3:51 PM | 4:11 PM | 20m | 14 - Regular talk Don't merge datasets when you don't need to. Preserving the 'Experimental unit' is a key! Dror Berel , Independent statistical consultant |
| 4:13 PM | 4:33 PM | 20m | 15 - Regular talk Generate Raw Synthetic Dataset for Clinical Trial Binod Jung Bogati , |
| 4:35 PM | 4:55 PM | 20m | 16 - Regular talk OralOpioids: The Role of Statistical Software in Dealing with the US Opioid Crisis Ankona Banerjee , Baylor College of Medicine |
| 4:57 PM | 5:17 PM | 20m | 17 - Regular talk World beyond {targets}: Embracing Data Pipelines in Life Sciences Aga Rasinska , Appsilon |
| 5:19 PM | 5:24 PM | 5m | 18 - Closing remarks , |
Meeting Day 2 Friday, June 14, 2024. |
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|---|---|---|---|
| Start Time | End Time | Duration | |
| 11:00 AM | 11:10 AM | 10m | 1 - Welcome Back Welcome to R/Medicine 2024 Peter Higgins Professor, University of Michigan |
| 11:13 AM | 12:15 PM | 1h 2m | 2 - Keynote Reproducibility in Medical Research Gundula Bosch Research Professor, Johns Hopkins |
| 12:17 PM | 12:37 PM | 20m | 3 - Regular Talk Ah, Ha, Ha, Ha, Parameterise! Creating parameterised plot functions for flexible and reproducible data-to-viz pipelines Cara Thompson , Building Stories with Data |
| 12:39 PM | 12:59 PM | 20m | 4 - Regular Talk HOLD , |
| 1:01 PM | 1:21 PM | 20m | 5 - Regular Talk Comparing Analysis Method Implementations in Software (CAMIS): An open source repository to document differences in statistical methodology across software Agnieszka Tomczyk , PAREXEL |
| 1:23 PM | 1:43 PM | 20m | 6 - Regular Talk PhyloTrace - a Shiny App for Bacterial Pathogen Monitoring on a Genomic Level Filip Paskali , |
| 1:43 PM | 1:58 PM | 15m | Break |
| 1:58 PM | 2:08 PM | 10m | 7 - Lightning Talk R in Clinical Competency Committee {shiny + reticulate + selenium + ...} Ken Koon Wong , Cleveland Clinic Akron General |
| 2:10 PM | 2:20 PM | 10m | 8 - Lightning Talk Health Equity Explorer Application Showcase Can Taşlıçukur, Appsilon , Bill Adams, Boston Medical Center |
| 2:22 PM | 2:32 PM | 10m | 9 - Lightning Talk in_vivo_research_dashboard.Rmd Michael McCoy , Children's Hospital of Philadelphia |
| 2:34 PM | 2:44 PM | 10m | 10 - Lightning Talk Shiny apps for medical image annotation Matt Broerman , University of Pittsburgh |
| 2:46 PM | 3:06 PM | 20m | 11 - Regular Talk Automating Sharing of Data Summaries from REDCap, Googlesheets, and Qualtrics with Quarto Webpages and Automated Emails Peter Higgins , University of Michigan |
| 3:08 PM | 3:28 PM | 20m | 12 - Regular Talk An omnibus R package for propensity score based dynamic borrowing methods for survival data Sanhita Sengupta , Bristol Myers Squibb |
| 3:28 PM | 3:43 PM | 15m | Break |
| 3:43 PM | 3:53 PM | 10m | 13 - Lightning Talk org+plnr: Packages for Organized Project Material and Effective Analysis Richard White , Consortium for Statistics in Disease Surveillance |
| 3:55 PM | 4:05 PM | 10m | 14 - Lightning Talk redcapAPI: Analysis-Ready Data Retrieval from REDCap with Advanced Processing Capabilities in R Savannah Obregon , Vanderbilt University Medical Center |
| 4:07 PM | 4:17 PM | 10m | 15 - Lightning Talk Enhancing Predictive Accuracy and Reproducibility in Medical Research: A Case Study on Thyroid Cancer Using Quarto, tidymodels, and GitHub Actions Marly Gotti , Apple Inc |
| 4:19 PM | 4:39 PM | 20m | 16 - Contest Winner HOLD , |
| 4:41 PM | 5:01 PM | 20m | 17 - Contest Winner HOLD , |
| 5:03 PM | 5:23 PM | 20m | 18 - Contest Winner HOLD , |
| 5:25 PM | 5:30 PM | 5m | 19 - Closing Remarks , |